STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0G2FZM4Putative splicing factor 3b subunit 4. (249 aa)    
Predicted Functional Partners:
A0A0G2FB77
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.998
A0A0G2FEX7
Putative pre-mrna-splicing factor rse1.
   
 0.998
A0A0G2FM69
Putative u2 snrnp component prp10.
    
 0.998
A0A0G2FTI8
Putative splicing factor 3b subunit 2.
   
 0.998
A0A0G2FM99
Putative pre-mrna splicing factor ini1.
    
 0.997
A0A0G2H4G1
Putative splicing factor 3a subunit 2.
   
 0.997
A0A0G2FWZ8
Putative pre-mrna-splicing factor sap114.
   
 0.996
A0A0G2HBS5
Putative splicing factor 3a subunit 3.
    
 0.996
A0A0G2FPU2
Putative u2 small nuclear ribonucleoprotein a.
    
 0.995
A0A0G2HG00
Putative lsm domain-containing protein.
    
 0.992
Your Current Organism:
Diaporthe ampelina
NCBI taxonomy Id: 1214573
Other names: CBS 114016, D. ampelina, Diaporthe ampelina (Berk. & M.A. Curtis) R.R. Gomes, C. Glienke & Crous, Diaporthe neoviticola, Diaporthe sp. DU-2012e, Fusicoccum viticolum, Phoma ampelina, Phoma viticola, Phomopsis ampelina, Phomopsis sp. Pho06, Phomopsis sp. Pho07, Phomopsis sp. Pho10, Phomopsis sp. Pho16, Phomopsis sp. Pho18, Phomopsis sp. Pho24, Phomopsis sp. Pho25, Phomopsis sp. Pho26, Phomopsis sp. Pho28, Phomopsis sp. Pho32, Phomopsis sp. PhoCT1L, Phomopsis sp. taxon 2, Phomopsis viticola, STEU 2660
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.