STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0G2HHG6Putative u2 small nuclear ribonucleoprotein blike protein. (205 aa)    
Predicted Functional Partners:
A0A0G2FPU2
Putative u2 small nuclear ribonucleoprotein a.
   
 0.996
A0A0G2FVU3
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.996
A0A0G2F7Y6
Putative small nuclear ribonucleoprotein f.
   
 0.995
A0A0G2G0Z8
Small nuclear ribonucleoprotein G.
   
 0.995
A0A0G2HMU0
Small nuclear ribonucleoprotein Sm D2.
   
 0.995
A0A0G2FJW0
Putative pre-mrna splicing factor cwc2.
    
 0.986
A0A0G2HBS5
Putative splicing factor 3a subunit 3.
   
 0.986
A0A0G2FU90
Putative 116 kDa u5 small nuclear ribonucleoprotein component.
   
 
 0.985
A0A0G2HC51
Putative cell cycle control protein.
   
 
 0.983
A0A0G2F6L9
Putative pre-mrna-splicing factor prp1.
   
 
 0.982
Your Current Organism:
Diaporthe ampelina
NCBI taxonomy Id: 1214573
Other names: CBS 114016, D. ampelina, Diaporthe ampelina (Berk. & M.A. Curtis) R.R. Gomes, C. Glienke & Crous, Diaporthe neoviticola, Diaporthe sp. DU-2012e, Fusicoccum viticolum, Phoma ampelina, Phoma viticola, Phomopsis ampelina, Phomopsis sp. Pho06, Phomopsis sp. Pho07, Phomopsis sp. Pho10, Phomopsis sp. Pho16, Phomopsis sp. Pho18, Phomopsis sp. Pho24, Phomopsis sp. Pho25, Phomopsis sp. Pho26, Phomopsis sp. Pho28, Phomopsis sp. Pho32, Phomopsis sp. PhoCT1L, Phomopsis sp. taxon 2, Phomopsis viticola, STEU 2660
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