STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0G2HI59Putative nuclear pore glycoprotein p62. (223 aa)    
Predicted Functional Partners:
A0A0G2F585
Putative nucleoporin nup44.
   
 0.998
A0A0G2FIP9
Putative nucleoporin nup157 170.
   
 0.990
A0A0G2HVJ9
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
    
 0.988
A0A0G2IBU6
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.987
A0A0G2FHX4
Putative nuclear pore complex subunit nup133.
   
 0.986
A0A0G2FNT3
Putative nucleoporin sonb.
   
 0.980
A0A0G2FTC8
Putative mrna export factor mex67.
    
 0.975
A0A0G2FPT3
Putative nuclear pore complex subunit; Belongs to the WD repeat SEC13 family.
   
 0.973
A0A0G2F7K0
Putative nuclear pore complex subunit.
   
 0.970
A0A0G2H4N5
Putative nuclear pore complex subunit.
   
 0.970
Your Current Organism:
Diaporthe ampelina
NCBI taxonomy Id: 1214573
Other names: CBS 114016, D. ampelina, Diaporthe ampelina (Berk. & M.A. Curtis) R.R. Gomes, C. Glienke & Crous, Diaporthe neoviticola, Diaporthe sp. DU-2012e, Fusicoccum viticolum, Phoma ampelina, Phoma viticola, Phomopsis ampelina, Phomopsis sp. Pho06, Phomopsis sp. Pho07, Phomopsis sp. Pho10, Phomopsis sp. Pho16, Phomopsis sp. Pho18, Phomopsis sp. Pho24, Phomopsis sp. Pho25, Phomopsis sp. Pho26, Phomopsis sp. Pho28, Phomopsis sp. Pho32, Phomopsis sp. PhoCT1L, Phomopsis sp. taxon 2, Phomopsis viticola, STEU 2660
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