STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0G2HRP8Putative pre-mrna splicing factor atp-dependent rna helicase prp43. (767 aa)    
Predicted Functional Partners:
A0A0G2FPU2
Putative u2 small nuclear ribonucleoprotein a.
   
 0.995
A0A0G2F9J8
Putative g-patch domain-containing protein.
 
 
 0.994
A0A0G2H7R5
Putative tfp11-domain-containing protein.
   
 0.994
A0A0G2HJ00
Putative pre-mrna-processing factor 17.
    
 0.994
A0A0G2FW01
Putative sas10 utp3 family protein.
   
 0.992
A0A0G2FJE0
Putative pre-mrna-splicing factor cef-1.
 
 
 0.987
A0A0G2IEX5
Putative atp-dependent rna helicase.
  
0.987
A0A0G2HC51
Putative cell cycle control protein.
   
 0.986
A0A0G2HZX8
Putative cell cycle control protein cwf14.
   
 0.983
A0A0G2FRA1
Putative nucleolar protein nop-58.
   
 
 0.980
Your Current Organism:
Diaporthe ampelina
NCBI taxonomy Id: 1214573
Other names: CBS 114016, D. ampelina, Diaporthe ampelina (Berk. & M.A. Curtis) R.R. Gomes, C. Glienke & Crous, Diaporthe neoviticola, Diaporthe sp. DU-2012e, Fusicoccum viticolum, Phoma ampelina, Phoma viticola, Phomopsis ampelina, Phomopsis sp. Pho06, Phomopsis sp. Pho07, Phomopsis sp. Pho10, Phomopsis sp. Pho16, Phomopsis sp. Pho18, Phomopsis sp. Pho24, Phomopsis sp. Pho25, Phomopsis sp. Pho26, Phomopsis sp. Pho28, Phomopsis sp. Pho32, Phomopsis sp. PhoCT1L, Phomopsis sp. taxon 2, Phomopsis viticola, STEU 2660
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