STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0G2IEX5Putative atp-dependent rna helicase. (767 aa)    
Predicted Functional Partners:
A0A0G2FWM0
Putative rrna processing protein.
   
 
 0.990
A0A0G2FHS7
Putative u3 small nucleolar ribonucleoprotein imp3.
   
  0.989
A0A0G2FUA5
Putative small nucleolar ribonucleoprotein complex subunit utp14.
   
 0.989
A0A0G2FW01
Putative sas10 utp3 family protein.
   
 0.989
A0A0G2FZX4
Putative atp-dependent rna helicase dbp8; Belongs to the DEAD box helicase family.
   
 0.989
A0A0G2FJF2
Putative utp21-domain-containing protein.
   
 
 0.988
A0A0G2FW46
Putative wd g-beta repeat containing protein.
   
 0.988
A0A0G2FZC9
Putative deah-box rna helicase.
  
0.988
A0A0G2I5J8
U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.
   
 0.988
A0A0G2HRP8
Putative pre-mrna splicing factor atp-dependent rna helicase prp43.
  
0.987
Your Current Organism:
Diaporthe ampelina
NCBI taxonomy Id: 1214573
Other names: CBS 114016, D. ampelina, Diaporthe ampelina (Berk. & M.A. Curtis) R.R. Gomes, C. Glienke & Crous, Diaporthe neoviticola, Diaporthe sp. DU-2012e, Fusicoccum viticolum, Phoma ampelina, Phoma viticola, Phomopsis ampelina, Phomopsis sp. Pho06, Phomopsis sp. Pho07, Phomopsis sp. Pho10, Phomopsis sp. Pho16, Phomopsis sp. Pho18, Phomopsis sp. Pho24, Phomopsis sp. Pho25, Phomopsis sp. Pho26, Phomopsis sp. Pho28, Phomopsis sp. Pho32, Phomopsis sp. PhoCT1L, Phomopsis sp. taxon 2, Phomopsis viticola, STEU 2660
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