STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000730585_00123Unannotated protein. (84 aa)    
Predicted Functional Partners:
map
Unannotated protein; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
  
    0.833
GCA_000730585_00122
Unannotated protein.
       0.517
GCA_000730585_00116
Unannotated protein.
 
     0.485
GCA_000730585_00119
Unannotated protein.
       0.467
GCA_000730585_00120
Unannotated protein.
       0.467
GCA_000730585_00121
Unannotated protein.
       0.467
GCA_000730585_00117
Unannotated protein.
       0.466
GCA_000730585_00118
Unannotated protein.
       0.466
GCA_000730585_00125
Unannotated protein; Belongs to the TPP enzyme family.
       0.436
GCA_000730585_03853
Unannotated protein.
  
     0.425
Your Current Organism:
Pseudomonas japonica
NCBI taxonomy Id: 1215104
Other names: P. japonica NBRC 103040 = DSM 22348, Pseudomonas japonica DSM 22348, Pseudomonas japonica DSM 22348 = NBRC 103040, Pseudomonas japonica IAM 15071, Pseudomonas japonica JCM 21532, Pseudomonas japonica NBRC 103040, Pseudomonas japonica NBRC 103040 = DSM 22348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.