STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCE83996.1Hypothetical protein. (316 aa)    
Predicted Functional Partners:
SCE83924.1
Hypothetical protein.
 
    0.966
SCE83941.1
Oxygen-independent coproporphyrinogen-3 oxidase.
 
    0.954
SCE83977.1
Hypothetical protein.
 
    0.954
SCE83959.1
Sulfatase.
 
     0.953
SCE84015.1
Hypothetical protein.
 
    
0.796
SCE84034.1
Pectin methylesterase.
       0.491
SCF44280.1
Hypothetical protein.
  
     0.454
SCF03802.1
Condensation domain-containing protein.
  
     0.420
SCE90345.1
DUF4097 and DUF4098 domain-containing protein YvlB.
  
     0.417
SCF40596.1
Hypothetical protein.
  
     0.412
Your Current Organism:
Micromonospora matsumotoense
NCBI taxonomy Id: 121616
Other names: ATCC 49364, CIP 106812, Catellatispora matsumotoense, Catellatispora matsumotoensis, Catellatospora matsumotoense, Catellatospora matsumotoensis, DSM 44100, IFO 14550, IMSNU 22003, JCM 9104, M. matsumotoense, Micromonospora matsumotoensis, NBRC 14550, NRRL B-16490, VKM Ac-2009, strain 6393-C
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