STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCF45971.1LysM domain-containing protein. (439 aa)    
Predicted Functional Partners:
SCF45961.1
TadE-like protein.
 
     0.889
SCF45956.1
TadE-like protein.
 
     0.876
SCF45930.1
Chaperone for flagella basal body P-ring formation.
 
     0.875
SCF45948.1
Type II secretion system (T2SS), protein F.
 
     0.875
SCF45944.1
Flp pilus assembly protein TadB.
 
     0.873
SCF45935.1
Cellulose biosynthesis protein BcsQ.
 
     0.866
SCF45966.1
Hypothetical protein.
 
     0.850
SCF45926.1
Hypothetical protein.
 
     0.832
SCE63821.1
Flp pilus assembly protein TadB.
 
     0.740
SCE63812.1
Flp pilus assembly protein TadB.
 
     0.733
Your Current Organism:
Micromonospora matsumotoense
NCBI taxonomy Id: 121616
Other names: ATCC 49364, CIP 106812, Catellatispora matsumotoense, Catellatispora matsumotoensis, Catellatospora matsumotoense, Catellatospora matsumotoensis, DSM 44100, IFO 14550, IMSNU 22003, JCM 9104, M. matsumotoense, Micromonospora matsumotoensis, NBRC 14550, NRRL B-16490, VKM Ac-2009, strain 6393-C
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.