STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCF46756.1Hypothetical protein. (257 aa)    
Predicted Functional Partners:
SCE83259.1
Ricin-type beta-trefoil lectin domain-like.
  
 
  0.829
SCF27975.1
Hypothetical protein.
  
     0.720
SCE83366.1
Ricin-type beta-trefoil lectin domain-containing protein.
  
  
  0.719
SCF17706.1
Ricin-type beta-trefoil lectin domain-containing protein.
  
     0.716
SCF37614.1
Cysteine-rich CPCC.
  
     0.708
SCF06941.1
Ricin-type beta-trefoil lectin domain-containing protein.
  
  
  0.686
SCE71169.1
Ricin-type beta-trefoil lectin domain-like.
  
 
  0.685
SCE83244.1
Ricin-type beta-trefoil lectin domain-containing protein.
  
  
  0.671
SCE98360.1
Hypothetical protein.
  
     0.654
SCF47245.1
Multiple sugar transport system substrate-binding protein.
  
     0.653
Your Current Organism:
Micromonospora matsumotoense
NCBI taxonomy Id: 121616
Other names: ATCC 49364, CIP 106812, Catellatispora matsumotoense, Catellatispora matsumotoensis, Catellatospora matsumotoense, Catellatospora matsumotoensis, DSM 44100, IFO 14550, IMSNU 22003, JCM 9104, M. matsumotoense, Micromonospora matsumotoensis, NBRC 14550, NRRL B-16490, VKM Ac-2009, strain 6393-C
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