ALV28932.1 protein (Pannonibacter phragmitetus)

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second shell of interactors

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Edges:

Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

ALV28932.1

ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)

Predicted Functional Partners:

ALV28931.1

0.912

ALV28930.1

0.902

ALV28929.1

0.885

ALV28928.1

0.811

ALV28933.1

0.800

ALV26594.1

0.514

ALV28827.1

0.419

ALV28927.1

0.400

Your Current Organism:

Pannonibacter phragmitetus

NCBI taxonomy Id: 121719
Other names: Achromobacter group B, Achromobacter group E, Achromobacter sp. LMG 5410, Achromobacter sp. LMG 5411, Achromobacter sp. LMG 5430, Achromobacter sp. LMG 5431, DSM 14782, LMG 22736, LMG:22736, NCAIM B02025, NCTC 13350, P. phragmitetus, Pannonibacter phragmitetus Borsodi et al. 2003, alpha proteobacterium C6-19, alpha proteobacterium C6/17, alpha proteobacterium C6/8, strain C6/19

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALV26594.1	ALV28931.1	APZ00_05465	APZ00_19330	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
ALV26594.1	ALV28932.1	APZ00_05465	APZ00_19335	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
ALV28827.1	ALV28932.1	APZ00_18685	APZ00_19335	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
ALV28927.1	ALV28928.1	APZ00_19310	APZ00_19315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the formation of malonyl-CoA from malonate and CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
ALV28927.1	ALV28929.1	APZ00_19310	APZ00_19320	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MCD, Malonyl-CoA decarboxylase MCD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
ALV28927.1	ALV28930.1	APZ00_19310	APZ00_19325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
ALV28927.1	ALV28931.1	APZ00_19310	APZ00_19330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
ALV28927.1	ALV28932.1	APZ00_19310	APZ00_19335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
ALV28928.1	ALV28927.1	APZ00_19315	APZ00_19310	Catalyzes the formation of malonyl-CoA from malonate and CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
ALV28928.1	ALV28929.1	APZ00_19315	APZ00_19320	Catalyzes the formation of malonyl-CoA from malonate and CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	MCD, Malonyl-CoA decarboxylase MCD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
ALV28928.1	ALV28930.1	APZ00_19315	APZ00_19325	Catalyzes the formation of malonyl-CoA from malonate and CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
ALV28928.1	ALV28931.1	APZ00_19315	APZ00_19330	Catalyzes the formation of malonyl-CoA from malonate and CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
ALV28928.1	ALV28932.1	APZ00_19315	APZ00_19335	Catalyzes the formation of malonyl-CoA from malonate and CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811
ALV28928.1	ALV28933.1	APZ00_19315	APZ00_19340	Catalyzes the formation of malonyl-CoA from malonate and CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
ALV28929.1	ALV28927.1	APZ00_19320	APZ00_19310	MCD, Malonyl-CoA decarboxylase MCD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
ALV28929.1	ALV28928.1	APZ00_19320	APZ00_19315	MCD, Malonyl-CoA decarboxylase MCD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the formation of malonyl-CoA from malonate and CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
ALV28929.1	ALV28930.1	APZ00_19320	APZ00_19325	MCD, Malonyl-CoA decarboxylase MCD; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.880
ALV28929.1	ALV28931.1	APZ00_19320	APZ00_19330	MCD, Malonyl-CoA decarboxylase MCD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
ALV28929.1	ALV28932.1	APZ00_19320	APZ00_19335	MCD, Malonyl-CoA decarboxylase MCD; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.885
ALV28929.1	ALV28933.1	APZ00_19320	APZ00_19340	MCD, Malonyl-CoA decarboxylase MCD; Derived by automated computational analysis using gene prediction method: Protein Homology.	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.643

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Network Stats

number of nodes:

11

number of edges:

47

average node degree:

8.55

avg. local clustering coefficient:

0.968

expected number of edges:

19

PPI enrichment p-value:

5.62e-08

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

10 of 103

1.4

2.42

8.13e-11

GO:0044271

Cellular nitrogen compound biosynthetic process

11 of 334

0.93

1.09

9.78e-09

GO:1901566

Organonitrogen compound biosynthetic process

11 of 441

0.81

0.85

1.55e-07

GO:0006414

Translational elongation

2 of 11

1.67

0.67

0.0487

GO:0044238

Primary metabolic process

11 of 1054

0.43

0.36

0.0012

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

7 of 55

1.51

2.2

3.03e-07

GO:0019843

rRNA binding

5 of 39

1.52

1.66

5.95e-05

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

7 of 60

1.48

2.2

1.22e-07

GO:0044391

Ribosomal subunit

3 of 13

1.77

1.58

0.00045

GO:0015935

Small ribosomal subunit

2 of 6

1.93

1.16

0.0056

GO:0005622

Intracellular anatomical structure

11 of 976

0.46

0.4

0.00019

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:105

rRNA-binding

7 of 24

1.87

3.82

1.70e-10

CL:106

rRNA-binding

6 of 16

1.98

3.75

1.89e-09

CL:98

Ribosome

9 of 44

1.72

3.71

4.10e-12

CL:108

Ribosomal subunit, and K Homology domain, type 2

4 of 6

2.23

3.02

9.12e-07

CL:81

Translation, and Ribonucleoside triphosphate biosynthetic process

11 of 139

1.31

2.24

4.10e-12

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

tpz03010

Ribosome

7 of 52

1.54

2.44

3.38e-08

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

5 of 42

1.49

1.55

0.00011

GOCC:0044391

Ribosomal subunit

3 of 16

1.68

1.25

0.0023

GOCC:0022627

Cytosolic small ribosomal subunit

2 of 6

1.93

1.03

0.0103

GOCC:0043229

Intracellular organelle

7 of 272

0.82

0.65

0.0016

GOCC:0005622

Intracellular

11 of 960

0.47

0.39

0.00089

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

7 of 53

1.53

2.35

7.98e-08

KW-0699

rRNA-binding

5 of 39

1.52

1.79

1.99e-05

KW-0251

Elongation factor

2 of 7

1.87

0.89

0.0188

KW-0648

Protein biosynthesis

3 of 41

1.27

0.74

0.0188

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