STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KTB49285.1Pfam: NifU-like N terminal domain; TIGRFAM: NifU_clost: FeS cluster assembly scaffold protein NifU. (144 aa)    
Predicted Functional Partners:
KTB49284.1
Pfam: Aminotransferase class-V.
 
 0.984
KTB49101.1
Cysteine sulfinate desulfinase/cysteine desulfurase or related enzyme; TIGRFAM: cysteine desulfurase NifS; Pfam: Aminotransferase class-V.
  
 0.929
KTB49254.1
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
 0.929
iscS
Cysteine desulfurase NifS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
  
 0.929
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.828
KTB48729.1
SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter.
  
  
 0.752
KTB48730.1
ABC-type transport system involved in Fe-S cluster assembly, permease component; Pfam: Uncharacterized protein family (UPF0051).
  
  
 0.749
KTB49283.1
Hypothetical protein.
       0.562
KTB47807.1
Hypothetical protein.
   
   0.554
KTB47808.1
Pfam: PLD-like domain.
   
   0.554
Your Current Organism:
Dehalogenimonas alkenigignens
NCBI taxonomy Id: 1217799
Other names: D. alkenigignens, Dehalogenimonas alkenigignens Bowman et al. 2013 emend. Key et al. 2017, Dehalogenimonas sp. IP3-3, Dehalogenimonas sp. SBP1, JCM 17062, NRRL B-59545, strain IP3-3
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