STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KTB47944.1Pfam: Acetyltransferase (GNAT) domain. (179 aa)    
Predicted Functional Partners:
KTB47942.1
ABC-type Co2+ transport system, permease component; Pfam: Cobalt uptake substrate-specific transmembrane region.
       0.773
KTB47943.1
Pfam: PDGLE domain.
       0.773
KTB47941.1
Fe2+/Zn2+ uptake regulation protein; Pfam: Ferric uptake regulator family; Belongs to the Fur family.
       0.741
KTB47945.1
'TIGRFAM: CbiQ_TIGR: cobalt ABC transporter, permease protein CbiQ; Pfam: Cobalt transport protein'.
  
    0.598
KTB47946.1
ABC-type cobalt transport system, ATPase component; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter.
       0.590
KTB47940.1
Putative Fe-S-cluster redox enzyme; TIGRFAM: TIGR00048: 23S rRNA m2A2503 methyltransferase; Belongs to the radical SAM superfamily. RlmN family.
   
   0.547
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.476
Your Current Organism:
Dehalogenimonas alkenigignens
NCBI taxonomy Id: 1217799
Other names: D. alkenigignens, Dehalogenimonas alkenigignens Bowman et al. 2013 emend. Key et al. 2017, Dehalogenimonas sp. IP3-3, Dehalogenimonas sp. SBP1, JCM 17062, NRRL B-59545, strain IP3-3
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