STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIN91950.1Trk system potassium uptake protein TrkA. (458 aa)    
Predicted Functional Partners:
SIN91937.1
Trk system potassium uptake protein TrkH.
 
 
 0.995
SIN82890.1
Trk system potassium uptake protein TrkH; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family.
 
 
 0.977
hflX
GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
     
 0.767
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
  0.686
hfq
RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
     
 0.675
SIO17853.1
Molybdopterin synthase subunit MoaE.
   
    0.671
SIO20616.1
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
    0.659
SIN91967.1
CHAT domain-containing protein.
       0.530
SIN91981.1
Hypothetical protein.
       0.530
SIN93170.1
16S rRNA (cytosine967-C5)-methyltransferase.
  
    0.510
Your Current Organism:
Oceanicola litoreus
NCBI taxonomy Id: 1217970
Other names: CCUG 62794, DSM 29440, KCTC 32083, O. litoreus, Oceanicola litoreus Park et al. 2013, Oceanicola sp. M-M22, strain M-M22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.