STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO29706.1Predicted acetyltransferase, GNAT family. (223 aa)    
Predicted Functional Partners:
SIN82417.1
Transcriptional regulator, MarR family with acetyltransferase activity; Manually curated.
  
  
  0.582
nhaA-2
Sodium/proton antiporter, NhaA family; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
       0.531
SIO29717.1
Rhodanese-related sulfurtransferase.
       0.517
SIO29728.1
Glyoxylase, beta-lactamase superfamily II.
       0.517
Your Current Organism:
Oceanicola litoreus
NCBI taxonomy Id: 1217970
Other names: CCUG 62794, DSM 29440, KCTC 32083, O. litoreus, Oceanicola litoreus Park et al. 2013, Oceanicola sp. M-M22, strain M-M22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.