STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EB1_09810Unannotated protein. (129 aa)    
Predicted Functional Partners:
EB1_08070
Unannotated protein.
 
 
 
 0.974
mutA
Unannotated protein.
       0.849
udk
Unannotated protein.
       0.849
EB1_09850
Unannotated protein.
       0.793
EB1_09840
Unannotated protein.
       0.775
EB1_09830
Unannotated protein.
       0.768
EB1_15590
Unannotated protein.
 
     0.685
fjo29
Unannotated protein; Belongs to the arginase family.
  
     0.669
MreD
Unannotated protein.
  
     0.614
EB1_15710
Unannotated protein.
 
     0.589
Your Current Organism:
Empedobacter brevis
NCBI taxonomy Id: 1218108
Other names: E. brevis NBRC 14943 = ATCC 43319, Empedobacter brevis ATCC 43319, Empedobacter brevis ATCC 43319 = NBRC 14943, Empedobacter brevis NBRC 14943, Empedobacter brevis NBRC 14943 = ATCC 43319
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.