Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LY56_00119 | ubiG | GCA_001870675_02191 | GCA_001870675_00006 | Unannotated protein. | Unannotated protein; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | 0.627 |
LY56_00862 | LY56_01393 | GCA_001870675_02988 | GCA_001870675_00182 | Unannotated protein. | Unannotated protein. | 0.575 |
LY56_00862 | LY56_02472 | GCA_001870675_02988 | GCA_001870675_00021 | Unannotated protein. | Unannotated protein. | 0.502 |
LY56_00862 | LY56_02870 | GCA_001870675_02988 | GCA_001870675_00351 | Unannotated protein. | Unannotated protein. | 0.444 |
LY56_00862 | ubiA | GCA_001870675_02988 | GCA_001870675_00482 | Unannotated protein. | Unannotated protein; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. | 0.643 |
LY56_00862 | ubiE | GCA_001870675_02988 | GCA_001870675_00022 | Unannotated protein. | Unannotated protein; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.523 |
LY56_00862 | ubiG | GCA_001870675_02988 | GCA_001870675_00006 | Unannotated protein. | Unannotated protein; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | 0.683 |
LY56_01393 | LY56_00862 | GCA_001870675_00182 | GCA_001870675_02988 | Unannotated protein. | Unannotated protein. | 0.575 |
LY56_01393 | LY56_02472 | GCA_001870675_00182 | GCA_001870675_00021 | Unannotated protein. | Unannotated protein. | 0.455 |
LY56_01393 | LY56_02870 | GCA_001870675_00182 | GCA_001870675_00351 | Unannotated protein. | Unannotated protein. | 0.898 |
LY56_01393 | ubiA | GCA_001870675_00182 | GCA_001870675_00482 | Unannotated protein. | Unannotated protein; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. | 0.938 |
LY56_01393 | ubiE | GCA_001870675_00182 | GCA_001870675_00022 | Unannotated protein. | Unannotated protein; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.938 |
LY56_01393 | ubiG | GCA_001870675_00182 | GCA_001870675_00006 | Unannotated protein. | Unannotated protein; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | 0.940 |
LY56_02472 | LY56_00862 | GCA_001870675_00021 | GCA_001870675_02988 | Unannotated protein. | Unannotated protein. | 0.502 |
LY56_02472 | LY56_01393 | GCA_001870675_00021 | GCA_001870675_00182 | Unannotated protein. | Unannotated protein. | 0.455 |
LY56_02472 | LY56_02870 | GCA_001870675_00021 | GCA_001870675_00351 | Unannotated protein. | Unannotated protein. | 0.487 |
LY56_02472 | ubiA | GCA_001870675_00021 | GCA_001870675_00482 | Unannotated protein. | Unannotated protein; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. | 0.450 |
LY56_02472 | ubiE | GCA_001870675_00021 | GCA_001870675_00022 | Unannotated protein. | Unannotated protein; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.881 |
LY56_02472 | ubiG | GCA_001870675_00021 | GCA_001870675_00006 | Unannotated protein. | Unannotated protein; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | 0.843 |
LY56_02488 | ubiG | GCA_001870675_00005 | GCA_001870675_00006 | Unannotated protein; Belongs to the peptidase S33 family. | Unannotated protein; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | 0.735 |
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