STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LY56_02440Unannotated protein. (311 aa)    
Predicted Functional Partners:
LY56_02439
Unannotated protein.
 0.993
LY56_02438
Unannotated protein.
 
 0.982
LY56_02437
Unannotated protein; Belongs to the ABC transporter superfamily.
  0.977
LY56_02546
Unannotated protein.
 0.963
LY56_02544
Unannotated protein; Belongs to the ABC transporter superfamily.
  0.959
LY56_01166
Unannotated protein; Belongs to the ABC transporter superfamily.
  0.959
LY56_03127
Unannotated protein; Belongs to the ABC transporter superfamily.
  0.959
LY56_01163
Unannotated protein.
 
 0.953
LY56_02767
Unannotated protein.
 0.928
LY56_02764
Unannotated protein.
  
 0.915
Your Current Organism:
Roseinatronobacter thiooxidans
NCBI taxonomy Id: 121821
Other names: DSM 13087, R. thiooxidans, Roseinatronobacter thiooxidans Sorokin et al. 2000, strain ALG 1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.