STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LY56_02428Unannotated protein. (460 aa)    
Predicted Functional Partners:
LY56_01941
Unannotated protein; Belongs to the citrate synthase family.
  
 
 0.925
LY56_01069
Unannotated protein.
 
    0.695
LY56_01399
Unannotated protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
  0.690
LY56_01619
Unannotated protein.
  
 
  0.690
LY56_00457
Unannotated protein.
  
 
  0.690
LY56_00058
Unannotated protein; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 
 0.683
LY56_02423
Unannotated protein.
 
 
  0.652
LY56_03233
Unannotated protein.
  
     0.601
LY56_00537
Unannotated protein.
 
 
 0.546
guaB
Unannotated protein; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
     
 0.517
Your Current Organism:
Roseinatronobacter thiooxidans
NCBI taxonomy Id: 121821
Other names: DSM 13087, R. thiooxidans, Roseinatronobacter thiooxidans Sorokin et al. 2000, strain ALG 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.