STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LY56_02800Unannotated protein; Belongs to the thiolase-like superfamily. Thiolase family. (389 aa)    
Predicted Functional Partners:
LY56_01399
Unannotated protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.997
LY56_01619
Unannotated protein.
  
 0.997
LY56_00457
Unannotated protein.
  
 0.997
LY56_02346
Unannotated protein.
 
 0.958
LY56_02799
Unannotated protein.
 
 
  0.953
LY56_02798
Unannotated protein.
 
     0.943
LY56_02801
Unannotated protein.
 
 
  0.941
LY56_03083
Unannotated protein.
  
 0.861
LY56_01383
Unannotated protein.
  
 0.793
LY56_03382
Unannotated protein; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.777
Your Current Organism:
Roseinatronobacter thiooxidans
NCBI taxonomy Id: 121821
Other names: DSM 13087, R. thiooxidans, Roseinatronobacter thiooxidans Sorokin et al. 2000, strain ALG 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.