Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LY56_01246 | LY56_02078 | GCA_001870675_01838 | GCA_001870675_00483 | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.517 |
LY56_01246 | dnaJ | GCA_001870675_01838 | GCA_001870675_00531 | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Unannotated protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK [...] | 0.725 |
LY56_02075 | LY56_02076 | GCA_001870675_00480 | GCA_001870675_00481 | Unannotated protein. | Unannotated protein. | 0.890 |
LY56_02075 | LY56_02078 | GCA_001870675_00480 | GCA_001870675_00483 | Unannotated protein. | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.626 |
LY56_02075 | LY56_02080 | GCA_001870675_00480 | GCA_001870675_00485 | Unannotated protein. | Unannotated protein. | 0.828 |
LY56_02075 | LY56_02081 | GCA_001870675_00480 | GCA_001870675_00486 | Unannotated protein. | Unannotated protein; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily. | 0.475 |
LY56_02075 | ubiA | GCA_001870675_00480 | GCA_001870675_00482 | Unannotated protein. | Unannotated protein; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. | 0.692 |
LY56_02076 | LY56_02075 | GCA_001870675_00481 | GCA_001870675_00480 | Unannotated protein. | Unannotated protein. | 0.890 |
LY56_02076 | LY56_02078 | GCA_001870675_00481 | GCA_001870675_00483 | Unannotated protein. | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.682 |
LY56_02076 | LY56_02079 | GCA_001870675_00481 | GCA_001870675_00484 | Unannotated protein. | Unannotated protein. | 0.493 |
LY56_02076 | LY56_02080 | GCA_001870675_00481 | GCA_001870675_00485 | Unannotated protein. | Unannotated protein. | 0.884 |
LY56_02076 | LY56_02081 | GCA_001870675_00481 | GCA_001870675_00486 | Unannotated protein. | Unannotated protein; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily. | 0.524 |
LY56_02076 | LY56_02082 | GCA_001870675_00481 | GCA_001870675_00487 | Unannotated protein. | Unannotated protein. | 0.431 |
LY56_02076 | ubiA | GCA_001870675_00481 | GCA_001870675_00482 | Unannotated protein. | Unannotated protein; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. | 0.785 |
LY56_02078 | LY56_01246 | GCA_001870675_00483 | GCA_001870675_01838 | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.517 |
LY56_02078 | LY56_02075 | GCA_001870675_00483 | GCA_001870675_00480 | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Unannotated protein. | 0.626 |
LY56_02078 | LY56_02076 | GCA_001870675_00483 | GCA_001870675_00481 | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Unannotated protein. | 0.682 |
LY56_02078 | LY56_02079 | GCA_001870675_00483 | GCA_001870675_00484 | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Unannotated protein. | 0.773 |
LY56_02078 | LY56_02080 | GCA_001870675_00483 | GCA_001870675_00485 | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Unannotated protein. | 0.849 |
LY56_02078 | LY56_02081 | GCA_001870675_00483 | GCA_001870675_00486 | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Unannotated protein; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily. | 0.736 |
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