STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LY56_02140Unannotated protein. (229 aa)    
Predicted Functional Partners:
LY56_02138
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.
 
  0.998
LY56_02139
Unannotated protein.
 
 
0.992
LY56_03309
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.988
LY56_02137
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.973
LY56_02325
Unannotated protein.
 
0.969
LY56_01779
Unannotated protein.
 
0.964
LY56_02136
Unannotated protein.
 
 
  0.947
LY56_01838
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.931
LY56_01781
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.918
LY56_01839
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.913
Your Current Organism:
Roseinatronobacter thiooxidans
NCBI taxonomy Id: 121821
Other names: DSM 13087, R. thiooxidans, Roseinatronobacter thiooxidans Sorokin et al. 2000, strain ALG 1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.