STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LY56_01575Unannotated protein; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. (308 aa)    
Predicted Functional Partners:
LY56_01576
Unannotated protein; Belongs to the reaction center PufL/M/PsbA/D family.
 
0.999
LY56_01577
Unannotated protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
 
 0.999
LY56_01578
Unannotated protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
 
 
 0.999
LY56_01611
Unannotated protein.
  
 0.999
LY56_01582
Unannotated protein; Belongs to the NifH/BchL/ChlL family.
 
  
 0.973
LY56_01618
Unannotated protein.
   
 
 0.966
LY56_01111
Unannotated protein.
   
 
 0.966
LY56_01612
Unannotated protein.
  
    0.961
LY56_01609
Unannotated protein.
  
    0.960
LY56_02384
Unannotated protein.
   
   0.957
Your Current Organism:
Roseinatronobacter thiooxidans
NCBI taxonomy Id: 121821
Other names: DSM 13087, R. thiooxidans, Roseinatronobacter thiooxidans Sorokin et al. 2000, strain ALG 1
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