Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LY56_01111 | LY56_01575 | GCA_001870675_01972 | GCA_001870675_00986 | Unannotated protein. | Unannotated protein; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | 0.966 |
LY56_01111 | LY56_01576 | GCA_001870675_01972 | GCA_001870675_00987 | Unannotated protein. | Unannotated protein; Belongs to the reaction center PufL/M/PsbA/D family. | 0.968 |
LY56_01111 | LY56_01611 | GCA_001870675_01972 | GCA_001870675_01022 | Unannotated protein. | Unannotated protein. | 0.949 |
LY56_01575 | LY56_01111 | GCA_001870675_00986 | GCA_001870675_01972 | Unannotated protein; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | Unannotated protein. | 0.966 |
LY56_01575 | LY56_01576 | GCA_001870675_00986 | GCA_001870675_00987 | Unannotated protein; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | Unannotated protein; Belongs to the reaction center PufL/M/PsbA/D family. | 0.999 |
LY56_01575 | LY56_01577 | GCA_001870675_00986 | GCA_001870675_00988 | Unannotated protein; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | Unannotated protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. | 0.999 |
LY56_01575 | LY56_01578 | GCA_001870675_00986 | GCA_001870675_00989 | Unannotated protein; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | Unannotated protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. | 0.999 |
LY56_01575 | LY56_01582 | GCA_001870675_00986 | GCA_001870675_00993 | Unannotated protein; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | Unannotated protein; Belongs to the NifH/BchL/ChlL family. | 0.973 |
LY56_01575 | LY56_01609 | GCA_001870675_00986 | GCA_001870675_01020 | Unannotated protein; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | Unannotated protein. | 0.960 |
LY56_01575 | LY56_01611 | GCA_001870675_00986 | GCA_001870675_01022 | Unannotated protein; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | Unannotated protein. | 0.999 |
LY56_01575 | LY56_01612 | GCA_001870675_00986 | GCA_001870675_01023 | Unannotated protein; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | Unannotated protein. | 0.961 |
LY56_01575 | LY56_01618 | GCA_001870675_00986 | GCA_001870675_01029 | Unannotated protein; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | Unannotated protein. | 0.966 |
LY56_01575 | LY56_02384 | GCA_001870675_00986 | GCA_001870675_00108 | Unannotated protein; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | Unannotated protein. | 0.957 |
LY56_01576 | LY56_01111 | GCA_001870675_00987 | GCA_001870675_01972 | Unannotated protein; Belongs to the reaction center PufL/M/PsbA/D family. | Unannotated protein. | 0.968 |
LY56_01576 | LY56_01575 | GCA_001870675_00987 | GCA_001870675_00986 | Unannotated protein; Belongs to the reaction center PufL/M/PsbA/D family. | Unannotated protein; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | 0.999 |
LY56_01576 | LY56_01577 | GCA_001870675_00987 | GCA_001870675_00988 | Unannotated protein; Belongs to the reaction center PufL/M/PsbA/D family. | Unannotated protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. | 0.999 |
LY56_01576 | LY56_01578 | GCA_001870675_00987 | GCA_001870675_00989 | Unannotated protein; Belongs to the reaction center PufL/M/PsbA/D family. | Unannotated protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. | 0.999 |
LY56_01576 | LY56_01582 | GCA_001870675_00987 | GCA_001870675_00993 | Unannotated protein; Belongs to the reaction center PufL/M/PsbA/D family. | Unannotated protein; Belongs to the NifH/BchL/ChlL family. | 0.976 |
LY56_01576 | LY56_01609 | GCA_001870675_00987 | GCA_001870675_01020 | Unannotated protein; Belongs to the reaction center PufL/M/PsbA/D family. | Unannotated protein. | 0.961 |
LY56_01576 | LY56_01611 | GCA_001870675_00987 | GCA_001870675_01022 | Unannotated protein; Belongs to the reaction center PufL/M/PsbA/D family. | Unannotated protein. | 0.999 |
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