STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LY56_03288Unannotated protein. (217 aa)    
Predicted Functional Partners:
LY56_03289
Unannotated protein.
 
     0.829
LY56_02293
Unannotated protein; Belongs to the ribF family.
    
  0.777
LY56_03292
Unannotated protein.
 
     0.759
LY56_00952
Unannotated protein.
  
 
  0.715
LY56_03290
Unannotated protein.
       0.671
LY56_03291
Unannotated protein.
       0.671
LY56_03293
Unannotated protein; Belongs to the ABC transporter superfamily.
       0.582
LY56_03459
Unannotated protein.
  
 
 0.582
LY56_01119
Unannotated protein.
  
 
 0.513
LY56_01158
Unannotated protein.
  
 
 0.477
Your Current Organism:
Roseinatronobacter thiooxidans
NCBI taxonomy Id: 121821
Other names: DSM 13087, R. thiooxidans, Roseinatronobacter thiooxidans Sorokin et al. 2000, strain ALG 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.