STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LY56_03242Unannotated protein. (360 aa)    
Predicted Functional Partners:
LY56_03243
Unannotated protein; Belongs to the 'phage' integrase family.
     0.951
LY56_01478
Unannotated protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
   
 0.928
LY56_01083
Unannotated protein.
   
 0.805
cysC
Unannotated protein; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
   
 
 0.725
LY56_01739
Unannotated protein.
   
 0.715
LY56_00434
Unannotated protein.
    
 0.624
LY56_01866
Unannotated protein; Belongs to the GcvT family.
     
 0.604
LY56_02256
Unannotated protein; Belongs to the GcvT family.
     
 0.604
LY56_01777
Unannotated protein.
    
 0.568
LY56_02005
Unannotated protein; Belongs to the GcvT family.
   
 
 0.540
Your Current Organism:
Roseinatronobacter thiooxidans
NCBI taxonomy Id: 121821
Other names: DSM 13087, R. thiooxidans, Roseinatronobacter thiooxidans Sorokin et al. 2000, strain ALG 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.