STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LY56_03401Unannotated protein. (502 aa)    
Predicted Functional Partners:
LY56_03402
Unannotated protein.
 
 0.991
LY56_03403
Unannotated protein; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
 
 0.962
LY56_03470
Unannotated protein.
 
 0.959
LY56_03469
Unannotated protein; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
 0.939
LY56_03173
Unannotated protein; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
 
 0.911
LY56_03172
Unannotated protein.
 
 0.904
LY56_03404
Unannotated protein.
 
     0.881
LY56_03210
Unannotated protein.
 
 
 0.859
LY56_03400
Unannotated protein.
       0.492
LY56_01959
Unannotated protein.
 
     0.477
Your Current Organism:
Roseinatronobacter thiooxidans
NCBI taxonomy Id: 121821
Other names: DSM 13087, R. thiooxidans, Roseinatronobacter thiooxidans Sorokin et al. 2000, strain ALG 1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.