STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LY56_02063Unannotated protein; Belongs to the LysR transcriptional regulatory family. (288 aa)    
Predicted Functional Partners:
LY56_02060
Unannotated protein.
  
    0.540
LY56_02062
Unannotated protein.
       0.538
LY56_02061
Unannotated protein.
       0.538
LY56_02059
Unannotated protein.
       0.538
LY56_02064
Unannotated protein.
       0.472
LY56_02484
Unannotated protein.
     
 0.466
LY56_00967
Unannotated protein.
  
    0.408
cynS
Unannotated protein; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.
  
  
  0.406
LY56_01478
Unannotated protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
      
 0.400
Your Current Organism:
Roseinatronobacter thiooxidans
NCBI taxonomy Id: 121821
Other names: DSM 13087, R. thiooxidans, Roseinatronobacter thiooxidans Sorokin et al. 2000, strain ALG 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.