STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LY56_01999Unannotated protein. (248 aa)    
Predicted Functional Partners:
LY56_02000
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.996
LY56_02834
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.
 0.989
LY56_02001
Unannotated protein.
 
 0.989
LY56_02832
Unannotated protein.
 
 0.988
LY56_02833
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.
 0.986
xylA
Unannotated protein; Belongs to the xylose isomerase family.
 
  
 0.853
xylB
Unannotated protein.
 
  
 0.843
LY56_02003
Unannotated protein.
 
     0.833
LY56_02002
Unannotated protein.
   
 0.813
LY56_02545
Unannotated protein.
     
 0.804
Your Current Organism:
Roseinatronobacter thiooxidans
NCBI taxonomy Id: 121821
Other names: DSM 13087, R. thiooxidans, Roseinatronobacter thiooxidans Sorokin et al. 2000, strain ALG 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.