LY56_01225 protein (Roseinatronobacter thiooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LY56_01225

Unannotated protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (112 aa)

Predicted Functional Partners:

LY56_00128

0.706

LY56_00743

0.610

LY56_01226

0.572

LY56_01227

0.559

dapD

0.546

LY56_02868

0.538

LY56_03434

0.538

LY56_03305

0.486

GCA_001870675_01752

0.484

LY56_03113

0.484

Your Current Organism:

Roseinatronobacter thiooxidans

NCBI taxonomy Id: 121821
Other names: DSM 13087, R. thiooxidans, Roseinatronobacter thiooxidans Sorokin et al. 2000, strain ALG 1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GCA_001870675_01752	LY56_00743	GCA_001870675_01752	GCA_001870675_03105	Unannotated protein.	Unannotated protein.	0.999
GCA_001870675_01752	LY56_01225	GCA_001870675_01752	GCA_001870675_01859	Unannotated protein.	Unannotated protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	0.484
GCA_001870675_01752	LY56_03305	GCA_001870675_01752	GCA_001870675_01528	Unannotated protein.	Unannotated protein.	0.489
LY56_00128	LY56_01225	GCA_001870675_02200	GCA_001870675_01859	Unannotated protein; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	Unannotated protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	0.706
LY56_00128	LY56_03305	GCA_001870675_02200	GCA_001870675_01528	Unannotated protein; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	Unannotated protein.	0.735
LY56_00743	GCA_001870675_01752	GCA_001870675_03105	GCA_001870675_01752	Unannotated protein.	Unannotated protein.	0.999
LY56_00743	LY56_01225	GCA_001870675_03105	GCA_001870675_01859	Unannotated protein.	Unannotated protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	0.610
LY56_00743	LY56_03113	GCA_001870675_03105	GCA_001870675_03106	Unannotated protein.	Unannotated protein.	0.999
LY56_00743	LY56_03305	GCA_001870675_03105	GCA_001870675_01528	Unannotated protein.	Unannotated protein.	0.645
LY56_01225	GCA_001870675_01752	GCA_001870675_01859	GCA_001870675_01752	Unannotated protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	Unannotated protein.	0.484
LY56_01225	LY56_00128	GCA_001870675_01859	GCA_001870675_02200	Unannotated protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	Unannotated protein; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	0.706
LY56_01225	LY56_00743	GCA_001870675_01859	GCA_001870675_03105	Unannotated protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	Unannotated protein.	0.610
LY56_01225	LY56_01226	GCA_001870675_01859	GCA_001870675_01858	Unannotated protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	Unannotated protein.	0.572
LY56_01225	LY56_01227	GCA_001870675_01859	GCA_001870675_01857	Unannotated protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.	0.559
LY56_01225	LY56_02868	GCA_001870675_01859	GCA_001870675_00349	Unannotated protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	Unannotated protein.	0.538
LY56_01225	LY56_03113	GCA_001870675_01859	GCA_001870675_03106	Unannotated protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	Unannotated protein.	0.484
LY56_01225	LY56_03305	GCA_001870675_01859	GCA_001870675_01528	Unannotated protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	Unannotated protein.	0.486
LY56_01225	LY56_03434	GCA_001870675_01859	GCA_001870675_01576	Unannotated protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	Unannotated protein; Belongs to the HIBADH-related family.	0.538
LY56_01225	dapD	GCA_001870675_01859	GCA_001870675_03166	Unannotated protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	Unannotated protein; Belongs to the transferase hexapeptide repeat family.	0.546
LY56_01226	LY56_01225	GCA_001870675_01858	GCA_001870675_01859	Unannotated protein.	Unannotated protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	0.572

page 1 of 2

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About