Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LY56_00017 | LY56_00697 | GCA_001870675_02089 | GCA_001870675_02526 | Unannotated protein. | Unannotated protein. | 0.887 |
LY56_00017 | LY56_00984 | GCA_001870675_02089 | GCA_001870675_02867 | Unannotated protein. | Unannotated protein. | 0.876 |
LY56_00017 | LY56_01109 | GCA_001870675_02089 | GCA_001870675_01974 | Unannotated protein. | Unannotated protein; Belongs to the folylpolyglutamate synthase family. | 0.437 |
LY56_00017 | LY56_02040 | GCA_001870675_02089 | GCA_001870675_01623 | Unannotated protein. | Unannotated protein; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis. | 0.876 |
LY56_00017 | fhs | GCA_001870675_02089 | GCA_001870675_02049 | Unannotated protein. | Unannotated protein; Belongs to the formate--tetrahydrofolate ligase family. | 0.899 |
LY56_00017 | folD | GCA_001870675_02089 | GCA_001870675_02047 | Unannotated protein. | Unannotated protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.940 |
LY56_00017 | gcvP | GCA_001870675_02089 | GCA_001870675_02091 | Unannotated protein. | Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.999 |
LY56_00017 | glyA | GCA_001870675_02089 | GCA_001870675_02640 | Unannotated protein. | Unannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.995 |
LY56_00017 | purH | GCA_001870675_02089 | GCA_001870675_01833 | Unannotated protein. | Unannotated protein. | 0.900 |
LY56_00017 | purN | GCA_001870675_02089 | GCA_001870675_03031 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | 0.890 |
LY56_00697 | LY56_00017 | GCA_001870675_02526 | GCA_001870675_02089 | Unannotated protein. | Unannotated protein. | 0.887 |
LY56_00697 | LY56_00984 | GCA_001870675_02526 | GCA_001870675_02867 | Unannotated protein. | Unannotated protein. | 0.998 |
LY56_00697 | LY56_01109 | GCA_001870675_02526 | GCA_001870675_01974 | Unannotated protein. | Unannotated protein; Belongs to the folylpolyglutamate synthase family. | 0.643 |
LY56_00697 | LY56_02040 | GCA_001870675_02526 | GCA_001870675_01623 | Unannotated protein. | Unannotated protein; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis. | 0.886 |
LY56_00697 | fhs | GCA_001870675_02526 | GCA_001870675_02049 | Unannotated protein. | Unannotated protein; Belongs to the formate--tetrahydrofolate ligase family. | 0.892 |
LY56_00697 | folD | GCA_001870675_02526 | GCA_001870675_02047 | Unannotated protein. | Unannotated protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.864 |
LY56_00697 | gcvP | GCA_001870675_02526 | GCA_001870675_02091 | Unannotated protein. | Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.926 |
LY56_00697 | glyA | GCA_001870675_02526 | GCA_001870675_02640 | Unannotated protein. | Unannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.900 |
LY56_00697 | purH | GCA_001870675_02526 | GCA_001870675_01833 | Unannotated protein. | Unannotated protein. | 0.879 |
LY56_00697 | purN | GCA_001870675_02526 | GCA_001870675_03031 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | 0.880 |
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