Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LY56_00069 | LY56_00070 | GCA_001870675_02141 | GCA_001870675_02142 | Unannotated protein. | Unannotated protein. | 0.765 |
LY56_00069 | LY56_00071 | GCA_001870675_02141 | GCA_001870675_02143 | Unannotated protein. | Unannotated protein. | 0.681 |
LY56_00070 | LY56_00069 | GCA_001870675_02142 | GCA_001870675_02141 | Unannotated protein. | Unannotated protein. | 0.765 |
LY56_00070 | LY56_00071 | GCA_001870675_02142 | GCA_001870675_02143 | Unannotated protein. | Unannotated protein. | 0.740 |
LY56_00071 | LY56_00069 | GCA_001870675_02143 | GCA_001870675_02141 | Unannotated protein. | Unannotated protein. | 0.681 |
LY56_00071 | LY56_00070 | GCA_001870675_02143 | GCA_001870675_02142 | Unannotated protein. | Unannotated protein. | 0.740 |
LY56_00071 | LY56_01395 | GCA_001870675_02143 | GCA_001870675_00184 | Unannotated protein. | Unannotated protein. | 0.872 |
LY56_00071 | LY56_02160 | GCA_001870675_02143 | GCA_001870675_00566 | Unannotated protein. | Unannotated protein; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins. | 0.872 |
LY56_00071 | LY56_02466 | GCA_001870675_02143 | GCA_001870675_00027 | Unannotated protein. | Unannotated protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication [...] | 0.723 |
LY56_00071 | LY56_02937 | GCA_001870675_02143 | GCA_001870675_01474 | Unannotated protein. | Unannotated protein. | 0.692 |
LY56_00071 | LY56_03068 | GCA_001870675_02143 | GCA_001870675_03151 | Unannotated protein. | Unannotated protein; Belongs to the UPF0301 (AlgH) family. | 0.988 |
LY56_00071 | dut | GCA_001870675_02143 | GCA_001870675_02521 | Unannotated protein. | Unannotated protein; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.744 |
LY56_00071 | ribB | GCA_001870675_02143 | GCA_001870675_01848 | Unannotated protein. | Unannotated protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.743 |
LY56_00071 | thyA | GCA_001870675_02143 | GCA_001870675_01624 | Unannotated protein. | Unannotated protein; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. | 0.716 |
LY56_01395 | LY56_00071 | GCA_001870675_00184 | GCA_001870675_02143 | Unannotated protein. | Unannotated protein. | 0.872 |
LY56_01395 | ribB | GCA_001870675_00184 | GCA_001870675_01848 | Unannotated protein. | Unannotated protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.758 |
LY56_02160 | LY56_00071 | GCA_001870675_00566 | GCA_001870675_02143 | Unannotated protein; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins. | Unannotated protein. | 0.872 |
LY56_02160 | ribB | GCA_001870675_00566 | GCA_001870675_01848 | Unannotated protein; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins. | Unannotated protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.758 |
LY56_02466 | LY56_00071 | GCA_001870675_00027 | GCA_001870675_02143 | Unannotated protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication [...] | Unannotated protein. | 0.723 |
LY56_02466 | LY56_03068 | GCA_001870675_00027 | GCA_001870675_03151 | Unannotated protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication [...] | Unannotated protein; Belongs to the UPF0301 (AlgH) family. | 0.741 |
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