STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LY56_00093Unannotated protein. (343 aa)    
Predicted Functional Partners:
ppk
Unannotated protein; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
 
  
 0.850
LY56_01774
Unannotated protein.
   
    0.836
LY56_01600
Unannotated protein.
   
    0.835
LY56_01601
Unannotated protein.
   
    0.835
LY56_02295
Unannotated protein.
   
    0.835
LY56_00072
Unannotated protein.
 
 
 0.814
LY56_02086
Unannotated protein.
   
    0.593
LY56_00981
Unannotated protein.
 
 
 0.561
LY56_00092
Unannotated protein.
       0.541
LY56_02093
Unannotated protein; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.488
Your Current Organism:
Roseinatronobacter thiooxidans
NCBI taxonomy Id: 121821
Other names: DSM 13087, R. thiooxidans, Roseinatronobacter thiooxidans Sorokin et al. 2000, strain ALG 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.