STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgkUnannotated protein; Belongs to the phosphoglycerate kinase family. (397 aa)    
Predicted Functional Partners:
tpiA
Unannotated protein; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
 0.999
eno
Unannotated protein; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
 
 0.998
LY56_00259
Unannotated protein; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
 0.989
LY56_00261
Unannotated protein; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
 0.989
LY56_00517
Unannotated protein; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
 0.989
LY56_02810
Unannotated protein; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
 0.987
gpmI
Unannotated protein; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
  
 
 0.984
LY56_01364
Unannotated protein; Belongs to the pyruvate kinase family.
 
 0.963
pgi
Unannotated protein; Belongs to the GPI family.
  
 0.959
LY56_01817
Unannotated protein.
    
 0.911
Your Current Organism:
Roseinatronobacter thiooxidans
NCBI taxonomy Id: 121821
Other names: DSM 13087, R. thiooxidans, Roseinatronobacter thiooxidans Sorokin et al. 2000, strain ALG 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.