STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LY56_00150Unannotated protein. (231 aa)    
Predicted Functional Partners:
LY56_01197
Unannotated protein.
  
 0.721
LY56_00147
Unannotated protein.
       0.693
dapE
Unannotated protein; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
       0.693
LY56_00149
Unannotated protein.
       0.693
LY56_01399
Unannotated protein; Belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.657
LY56_01619
Unannotated protein.
     
 0.657
LY56_00457
Unannotated protein.
     
 0.657
LY56_01181
Unannotated protein.
  
  0.620
LY56_00151
Unannotated protein.
    
  0.617
LY56_02520
Unannotated protein.
   
 0.559
Your Current Organism:
Roseinatronobacter thiooxidans
NCBI taxonomy Id: 121821
Other names: DSM 13087, R. thiooxidans, Roseinatronobacter thiooxidans Sorokin et al. 2000, strain ALG 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.