Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LY56_00403 | LY56_00430 | GCA_001870675_02475 | GCA_001870675_02793 | Unannotated protein. | Unannotated protein. | 0.869 |
LY56_00403 | LY56_00544 | GCA_001870675_02475 | GCA_001870675_02679 | Unannotated protein. | Unannotated protein; Belongs to the inositol monophosphatase superfamily. | 0.741 |
LY56_00403 | LY56_01737 | GCA_001870675_02475 | GCA_001870675_01148 | Unannotated protein. | Unannotated protein. | 0.919 |
LY56_00403 | LY56_02893 | GCA_001870675_02475 | GCA_001870675_00374 | Unannotated protein. | Unannotated protein. | 0.865 |
LY56_00430 | LY56_00403 | GCA_001870675_02793 | GCA_001870675_02475 | Unannotated protein. | Unannotated protein. | 0.869 |
LY56_00430 | LY56_00544 | GCA_001870675_02793 | GCA_001870675_02679 | Unannotated protein. | Unannotated protein; Belongs to the inositol monophosphatase superfamily. | 0.802 |
LY56_00430 | LY56_01737 | GCA_001870675_02793 | GCA_001870675_01148 | Unannotated protein. | Unannotated protein. | 0.869 |
LY56_00430 | LY56_02893 | GCA_001870675_02793 | GCA_001870675_00374 | Unannotated protein. | Unannotated protein. | 0.904 |
LY56_00430 | cysC | GCA_001870675_02793 | GCA_001870675_02042 | Unannotated protein. | Unannotated protein; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. | 0.765 |
LY56_00430 | nusA | GCA_001870675_02793 | GCA_001870675_00016 | Unannotated protein. | Unannotated protein; Participates in both transcription termination and antitermination. | 0.624 |
LY56_00430 | nusG | GCA_001870675_02793 | GCA_001870675_02081 | Unannotated protein. | Unannotated protein; Participates in transcription elongation, termination and antitermination. | 0.626 |
LY56_00430 | rpoB | GCA_001870675_02793 | GCA_001870675_00477 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.592 |
LY56_00430 | rpoC | GCA_001870675_02793 | GCA_001870675_00476 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.631 |
LY56_00430 | rpoZ | GCA_001870675_02793 | GCA_001870675_01821 | Unannotated protein. | Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.594 |
LY56_00544 | LY56_00403 | GCA_001870675_02679 | GCA_001870675_02475 | Unannotated protein; Belongs to the inositol monophosphatase superfamily. | Unannotated protein. | 0.741 |
LY56_00544 | LY56_00430 | GCA_001870675_02679 | GCA_001870675_02793 | Unannotated protein; Belongs to the inositol monophosphatase superfamily. | Unannotated protein. | 0.802 |
LY56_00544 | LY56_01737 | GCA_001870675_02679 | GCA_001870675_01148 | Unannotated protein; Belongs to the inositol monophosphatase superfamily. | Unannotated protein. | 0.741 |
LY56_00544 | LY56_02893 | GCA_001870675_02679 | GCA_001870675_00374 | Unannotated protein; Belongs to the inositol monophosphatase superfamily. | Unannotated protein. | 0.805 |
LY56_00544 | cysC | GCA_001870675_02679 | GCA_001870675_02042 | Unannotated protein; Belongs to the inositol monophosphatase superfamily. | Unannotated protein; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. | 0.765 |
LY56_00544 | nusA | GCA_001870675_02679 | GCA_001870675_00016 | Unannotated protein; Belongs to the inositol monophosphatase superfamily. | Unannotated protein; Participates in both transcription termination and antitermination. | 0.624 |
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