STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LY56_02321Unannotated protein. (156 aa)    
Predicted Functional Partners:
LY56_02386
Unannotated protein.
 
     0.699
LY56_02385
Unannotated protein.
 
     0.611
LY56_03383
Unannotated protein.
 
    0.560
LY56_02322
Unannotated protein.
   
   0.518
LY56_02381
Unannotated protein.
 
    0.480
LY56_02380
Unannotated protein.
 
     0.473
LY56_02382
Unannotated protein.
 
     0.471
LY56_01948
Unannotated protein.
  
    0.471
LY56_02320
Unannotated protein.
       0.466
LY56_01119
Unannotated protein.
  
 
  0.418
Your Current Organism:
Roseinatronobacter thiooxidans
NCBI taxonomy Id: 121821
Other names: DSM 13087, R. thiooxidans, Roseinatronobacter thiooxidans Sorokin et al. 2000, strain ALG 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.