STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yitW3N-6 adenine-specific DNA methylase YitW. (107 aa)    
Predicted Functional Partners:
JG30_01480
Cysteine desulfurase family protein.
  
  
 0.826
nifU
NifU family protein.
  
    0.774
JG30_01460
Uncharacterized protein.
       0.773
selB
Selenocysteine-specific translation elongation factor.
       0.773
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
       0.773
yedF
Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
       0.740
JG30_00610
ABC transporter ATPase component; 3'end.
 
  
 0.733
JG30_00750
Oxidoreductase FAD/NAD(P)-binding subunit.
  
 
 0.675
sufD2
FeS assembly protein SufD.
 
   
 0.646
JG30_01510
Putative membrane protein.
       0.617
Your Current Organism:
Lactobacillus mellifer
NCBI taxonomy Id: 1218492
Other names: CCUG 63291, DSM 26254, L. mellifer, Lactobacillus mellifer Olofsson et al. 2014, Lactobacillus sp. Bin4, Lactobacillus sp. Bin4N, strain Bin4N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.