STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JG30_07380Transcription regulator, DeoR family. (255 aa)    
Predicted Functional Partners:
JG30_09080
PTS Fru IIABC.
  
  
 0.766
JG30_15550
Sugar-phosphate isomerase, RpiB/LacA/LacB family.
  
 
 0.643
JG30_16200
Ribose 5-phosphate isomerase B.
  
 
 0.643
JG30_07390
Ribitol-5-phosphate 2-dehydrogenase.
 
   
 0.606
JG30_11590
Acetyltransferase.
    
   0.594
pfkB
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
  
 0.587
JG30_07400
PTS Man IIA.
  
  
 0.543
JG30_15940
Tagatose-6-phosphate kinase / 1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
  
 0.516
JG30_15370
PTS Glc IIBCA.
  
  
 0.494
JG30_07410
PTS Man IIB.
  
    0.492
Your Current Organism:
Lactobacillus mellifer
NCBI taxonomy Id: 1218492
Other names: CCUG 63291, DSM 26254, L. mellifer, Lactobacillus mellifer Olofsson et al. 2014, Lactobacillus sp. Bin4, Lactobacillus sp. Bin4N, strain Bin4N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.