STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JF76_04230GntR family transcriptional regulator. (238 aa)    
Predicted Functional Partners:
AgaS
Sugar isomerase protein AgaS.
 
  
 0.849
JF76_04890
Transcriptional regulator, GntR family.
  
    0.758
JF76_04270
PTS Man IID.
 
    0.543
JF76_04260
PTS Man IIC.
 
    0.542
JF76_04250
PTS Man IIB.
 
    0.530
NagA
N-acetylglucosamine-6-phosphate deacetylase.
  
  
 0.504
JF76_16710
Cupin domain protein.
  
    0.492
JF76_04220
Uncharacterized protein.
       0.470
JF76_04280
PTS Man IIA.
 
     0.449
JF76_04210
PTS Gat IIC.
       0.410
Your Current Organism:
Lactobacillus kullabergensis
NCBI taxonomy Id: 1218493
Other names: CCUG 63631, DSM 26262, L. kullabergensis, Lactobacillus kullabergensis Olofsson et al. 2014, Lactobacillus sp. Biut2, Lactobacillus sp. Biut2N, Lactobacillus sp. ESL0186, Lactobacillus sp. H6HS21N, strain Biut2N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.