STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JF76_06440PTS Gat IIC. (514 aa)    
Predicted Functional Partners:
JF76_06420
PTS Gat IIA.
 
 
 0.995
JF76_06430
PTS Gat IIB.
 
 
 0.995
JF76_05920
Phosphocarrier protein HPr.
    
 0.908
JF76_03940
PTS Gat IIA.
 
  
 0.876
JF76_02810
PTS Gat IIA.
 
  
 0.870
JF76_03950
PTS Gat IIB.
 
  
 0.868
JF76_06460
Uncharacterized protein.
 
  
 0.853
JF76_04190
PTS Gat IIA.
 
  
 0.825
JF76_02780
PTS Gat IIA.
 
  
 0.820
JF76_02830
PTS Gat IIB.
 
  
 0.816
Your Current Organism:
Lactobacillus kullabergensis
NCBI taxonomy Id: 1218493
Other names: CCUG 63631, DSM 26262, L. kullabergensis, Lactobacillus kullabergensis Olofsson et al. 2014, Lactobacillus sp. Biut2, Lactobacillus sp. Biut2N, Lactobacillus sp. ESL0186, Lactobacillus sp. H6HS21N, strain Biut2N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.