STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mreDRod shape-determining protein MreD. (177 aa)    
Predicted Functional Partners:
mreC
Cell shape-determining protein MreC; Involved in formation and maintenance of cell shape.
       0.797
JF76_03520
Beta-lactamase.
  
     0.774
JF76_06710
Uncharacterized protein.
  
     0.774
JF76_09150
Uncharacterized protein.
  
     0.774
JF76_01860
Transcriptional regulator.
  
     0.772
JF76_09970
Uncharacterized protein.
  
     0.762
JF76_13900
2,3-cyclic nucleotide.
  
     0.759
JF76_01410
YycH protein.
  
     0.757
JF76_02510
CvpA family protein.
  
     0.757
JF76_15950
Beta-propeller domain of methanol dehydrogenase type.
  
     0.757
Your Current Organism:
Lactobacillus kullabergensis
NCBI taxonomy Id: 1218493
Other names: CCUG 63631, DSM 26262, L. kullabergensis, Lactobacillus kullabergensis Olofsson et al. 2014, Lactobacillus sp. Biut2, Lactobacillus sp. Biut2N, Lactobacillus sp. ESL0186, Lactobacillus sp. H6HS21N, strain Biut2N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.