STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thrB2Homoserine kinase. (292 aa)    
Predicted Functional Partners:
metK1
5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase.
  
 
 0.952
KOY69369.1
SprT-like protein; Belongs to the SprT family.
 
     0.837
tex
Transcriptional accessory protein.
       0.776
nadE
NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family.
     
 0.575
KOY68278.1
Galactoside O-acetyltransferase.
     
 0.562
KOY69367.1
Uncharacterized protein.
       0.557
KOY68108.1
Hypothetical protein; Belongs to the methylenetetrahydrofolate reductase family.
 
  
 0.551
KOY68320.1
Hypothetical protein; Belongs to the methylenetetrahydrofolate reductase family.
 
  
 0.544
pncB
Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.
       0.523
arat5
Aromatic amino acid aminotransferase.
  
 0.521
Your Current Organism:
Lactobacillus apinorum
NCBI taxonomy Id: 1218495
Other names: CCUG 63287, DSM 26257, L. apinorum, Lactobacillus apinorum Olofsson et al. 2014, Lactobacillus sp. Fhon13N, Lactobacillus sp. Kvahm3N, strain Fhon13N
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