STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JF75_05030GntR family transcriptional regulator. (239 aa)    
Predicted Functional Partners:
JF75_05040
Transcriptional regulator, GntR family.
 
    0.956
JF75_05050
PTS Man IIB.
 
    0.810
JF75_05060
PTS Man IIC.
 
    0.804
JF75_05860
Hypothetical protein.
  
     0.772
JF75_14930
Hypothetical protein.
  
     0.769
JF75_05090
Sugar isomerase; Catalyzes the conversion of a range of fructosamine 6- phosphates to glucose 6-phosphate and a free amino acid.
 
  
 0.764
JF75_05070
PTS Man IID.
 
    0.763
JF75_15500
Hypothetical protein.
  
     0.759
JF75_05080
Sugar isomerase.
 
     0.733
JF75_00410
Uncharacterized protein.
  
     0.707
Your Current Organism:
Lactobacillus kimbladii
NCBI taxonomy Id: 1218506
Other names: CCUG 63633, DSM 26263, L. kimbladii, Lactobacillus kimbladii Olofsson et al. 2014, Lactobacillus sp. H6HS28N, Lactobacillus sp. Hma2N, strain Hma2N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.