STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JF75_06750Permease component of an ABC superfamily L-carnitine/choline transporter. (207 aa)    
Predicted Functional Partners:
opuCa
ABC transporter, Glycine betaine/L-proline transporter ATPase component.
 0.999
opuCC
Glycine betaine/L-proline ABC superfamily ATP binding cassette transporter, binding protein.
 
 0.999
JF75_03060
Putative osmoprotectant ABC transporter ATP-binding protein.
 0.995
opuCD
Glycine betaine/L-proline ABC superfamily ATP binding cassette transporter, permease protein.
 
 
0.989
JF75_03050
Putative osmoprotectant ABC transporter permease/substrate-binding protein.
 
 
0.976
JF75_01870
Amino acid ABC transporter permease.
     
 0.774
JF75_16330
ABC-type amino acid transport system, permease and periplasmic component.
     
 0.774
potA2
ABC superfamily ATP binding cassette transporter, ABC protein; Belongs to the ABC transporter superfamily.
   
 0.732
JF75_10780
Lipoprotein; Belongs to the nlpA lipoprotein family.
  
 
  0.711
JF75_19170
CBS domain containing protein.
    
 0.695
Your Current Organism:
Lactobacillus kimbladii
NCBI taxonomy Id: 1218506
Other names: CCUG 63633, DSM 26263, L. kimbladii, Lactobacillus kimbladii Olofsson et al. 2014, Lactobacillus sp. H6HS28N, Lactobacillus sp. Hma2N, strain Hma2N
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.