STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fniIsopentenyl diphosphate isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). (338 aa)    
Predicted Functional Partners:
JF75_09810
Phosphomevalonate kinase.
 
 0.997
mvaD
Diphosphomevalonate decarboxylase.
 
  
 0.994
JF75_09790
GMP synthase, mevalonate kinase.
 
 
 0.981
glcD
Glycolate oxidase.
  
 0.954
JF75_09180
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.949
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
  
 
 0.948
ispA
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 
 0.946
JF75_06420
Hydroxymethylglutaryl-CoA synthase.
 
 
 0.936
JF75_02540
Hypothetical protein.
  
 
 0.821
JF75_02550
Hypothetical protein.
  
 
 0.821
Your Current Organism:
Lactobacillus kimbladii
NCBI taxonomy Id: 1218506
Other names: CCUG 63633, DSM 26263, L. kimbladii, Lactobacillus kimbladii Olofsson et al. 2014, Lactobacillus sp. H6HS28N, Lactobacillus sp. Hma2N, strain Hma2N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.