STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JF75_09980ABC transporter ATP binding protein. (235 aa)    
Predicted Functional Partners:
JF75_00740
ABC-type Na+ efflux pump, permease component.
 
 
 0.940
JF75_09990
Transcriptional regulator.
 
     0.940
JF75_09970
Hypothetical protein.
       0.790
JF75_10040
Transcriptional regulator.
 
     0.786
JF75_10070
ABC superfamily ATP binding cassette transporter, ABC protein.
 
  
 
0.700
JF75_07480
ABC transporter ATPase component.
 
  
 
0.622
JF75_12610
Multidrug ABC transporter ATP binding protein.
 
  
 
0.593
JF75_14810
ABC superfamily ATP binding cassette transporter, ABC protein.
 
  
 
0.591
JF75_03910
Hypothetical protein.
 
  
 
0.589
JF75_08810
Hypothetical protein.
 
  
 
0.588
Your Current Organism:
Lactobacillus kimbladii
NCBI taxonomy Id: 1218506
Other names: CCUG 63633, DSM 26263, L. kimbladii, Lactobacillus kimbladii Olofsson et al. 2014, Lactobacillus sp. H6HS28N, Lactobacillus sp. Hma2N, strain Hma2N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.