STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JF75_12660DNA repair ATPase. (832 aa)    
Predicted Functional Partners:
JF75_12670
Phosphoesterase.
 
 
 0.975
JF75_12680
Uncharacterized protein; Belongs to the UPF0342 family.
 
     0.848
cbf
CMP-binding-factor 1.
  
    0.833
pbpF
Penicillin-binding protein.
       0.801
JF75_09010
Uncharacterized protein.
  
     0.683
rexB
ATP-dependent helicase/deoxyribonuclease subunit B; ATP-dependent DNA helicase.
 
   
 0.629
JF75_03750
Uncharacterized protein.
  
     0.613
JF75_07590
Uncharacterized protein.
  
     0.606
rluD3
Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.593
JF75_02030
Transcriptional regulator.
  
     0.556
Your Current Organism:
Lactobacillus kimbladii
NCBI taxonomy Id: 1218506
Other names: CCUG 63633, DSM 26263, L. kimbladii, Lactobacillus kimbladii Olofsson et al. 2014, Lactobacillus sp. H6HS28N, Lactobacillus sp. Hma2N, strain Hma2N
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.