STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JF74_01010ATP-binding transport protein natA ABC transporter. (315 aa)    
Predicted Functional Partners:
JF74_01020
ABC-type uncharacterized transport system, permease component.
 
  
  0.973
JF74_01030
Putative integral membrane transport protein.
 
    0.953
livD
ABC superfamily ATP binding cassette transporter, ABC protein.
   
 
0.914
JF74_06950
Uncharacterized protein.
 
  
  0.887
JF74_09360
ABC superfamily ATP binding cassette transporter, membrane protein.
  
 0.849
JF74_09370
ABC superfamily ATP binding cassette transporter, membrane protein.
  
 0.849
JF74_12750
Hypothetical protein.
  
 0.849
JF74_13010
Hypothetical protein.
  
 0.849
JF74_13020
Hypothetical protein.
  
 0.849
JF74_14570
ABC-type multidrug transport system, permease component.
  
 
 0.840
Your Current Organism:
Lactobacillus melliventris
NCBI taxonomy Id: 1218507
Other names: CCUG 63629, DSM 26256, L. melliventris, Lactobacillus melliventris Olofsson et al. 2014, Lactobacillus sp. ESL0184, Lactobacillus sp. Hma8, Lactobacillus sp. Hma8N, strain Hma8N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.