STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JF74_01800Uncharacterized protein. (613 aa)    
Predicted Functional Partners:
JF74_17180
Sortase.
 
   
 0.693
JF74_06880
CopY/TcrY family copper transport repressor.
    
  0.623
JF74_15180
Putative S-layer protein.
 
     0.619
trxA
Thioredoxin; Belongs to the thioredoxin family.
    
  0.554
rmaB
MarR family transcriptional regulator.
 
  
 0.524
JF74_17100
Hypothetical protein.
 
     0.518
JF74_01790
Hypothetical protein.
       0.505
JF74_02000
Uncharacterized protein.
  
     0.461
JF74_03780
Hypothetical protein.
 
     0.423
nagZ
Beta-hexosamidase A, glycoside hydrolase family 3.
 
  
  0.414
Your Current Organism:
Lactobacillus melliventris
NCBI taxonomy Id: 1218507
Other names: CCUG 63629, DSM 26256, L. melliventris, Lactobacillus melliventris Olofsson et al. 2014, Lactobacillus sp. ESL0184, Lactobacillus sp. Hma8, Lactobacillus sp. Hma8N, strain Hma8N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.