STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JF74_05720Uncharacterized protein. (152 aa)    
Predicted Functional Partners:
JF74_05730
LytTr DNA-binding domain protein.
 
   
 0.960
JF74_06880
CopY/TcrY family copper transport repressor.
  
 
 0.927
JF74_02720
Hypothetical protein.
    
 0.797
JF74_15180
Putative S-layer protein.
 
  
  0.764
ylbB
ABC transporter permease protein.
    
  0.660
smc
Chromosome partition protein Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
    
  0.641
JF74_03700
ABC superfamily ATP binding cassette transporter, permease protein.
    
  0.602
JF74_07970
Penicillin-binding protein.
    
 0.587
JF74_11980
Penicillin-binding protein.
    
 0.587
JF74_03720
Glycerol-3-phosphate ABC transporter.
  
 
  0.550
Your Current Organism:
Lactobacillus melliventris
NCBI taxonomy Id: 1218507
Other names: CCUG 63629, DSM 26256, L. melliventris, Lactobacillus melliventris Olofsson et al. 2014, Lactobacillus sp. ESL0184, Lactobacillus sp. Hma8, Lactobacillus sp. Hma8N, strain Hma8N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.