STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaC-2Uronate isomerase. (470 aa)    
Predicted Functional Partners:
JG29_01160
Fructuronate reductase.
 
 
 0.980
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.970
uxaB
Altronate oxidoreductase.
 
 
 0.951
JG29_01190
Transporter, major facilitator family protein.
 
   
 0.761
JG29_01200
Glycosyl hydrolase, family 31; Belongs to the glycosyl hydrolase 31 family.
 
     0.698
JG29_00890
D-galactarate dehydratase/Altronate hydrolase domain protein.
 
  
 0.585
JG29_01680
L-ribulose-5-phosphate 4-epimerase.
     
 0.551
JG29_01830
L-ribulose-5-phosphate 4-epimerase.
     
 0.551
JG29_01150
GntR family transcription regulator.
     
 0.521
JG29_01720
Alpha-N-arabinofuranosidase 1.
     
 0.495
Your Current Organism:
Lactobacillus mellis
NCBI taxonomy Id: 1218508
Other names: CCUG 63289, DSM 26255, L. mellis, Lactobacillus mellis Olofsson et al. 2014, Lactobacillus sp. H1HS38N, Lactobacillus sp. Hon2, Lactobacillus sp. Hon2N, strain Hon2N
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